Tuesday 24 March 2020

Publications using Biodiverse in 2019

2020 is now in full swing, so here is a list of publications from 2019 that used Biodiverse. 

If you want to see the full list (111 at the time of writing), then go to https://github.com/shawnlaffan/biodiverse/wiki/PublicationsList 

For more details about Biodiverse, see http://shawnlaffan.github.io/biodiverse/ 

Shawn Laffan

Allen, J.M., Germain-Aubrey, C.C., Barve, N., Neubig, K., Majure, L.C., Laffan, S.W., Mishler, B.D., Owens, H.L., Smith, S.A., Whitten, W.M., Abbott, J.R., Soltis, D.E., Guralnick, R. and Soltis, P.S. (2019) Spatial phylogenetics of Florida vascular plants: The effects of calibration and uncertainty on diversity estimates. iScience, 11, 57-70.

Crouch, N.M.A., Capurucho, J.M.G., Hackett, S.J. and Bates, J.M. (2019) Evaluating the contribution of dispersal to community structure in Neotropical passerine birds. Ecography, 42, 390-399.
Dagallier, L.-P.M.J., Janssens, S.B., Dauby, G., Blach-Overgaard, A., Mackinder, B.A., Droissart, V., Svenning, J.-C., Sosef, M.S.M., Stévart, T., Harris, D.J., Sonké, B., Wieringa, J.J., Hardy, O.J. and Couvreur, T.L.P. (2019) Cradles and museums of generic plant diversity across tropical Africa. New Phytologist.

Daru, B.H., le Roux, P.C., Gopalraj, J., Park, D.S., Holt, B.G. and Greve, M. (2019) Spatial overlaps between the global protected areas network and terrestrial hotspots of evolutionary diversity. Global Ecology and Biogeography, 28, 757-766.

Fuentes-Castillo, T., Scherson, R.A., Marquet, P.A., Fajardo, P., Corcoran, D., Román, M.J. and Pliscoff, P. (2019) Modelling the current and future biodiversity distribution in the Chilean Mediterranean hotspot. The role of protected areas network in a warmer future. Diversity and Distributions, 25, 1897-1909.

Gallien, L., Thornhill, A.H., Zurell, D., Miller, J.T., and Richardson, D.M. (2019) Global predictors of alien plant establishment success: combining niche and trait proxies. Proceedings of the Royal Society B, 286, 20182477.

Garcia–R, J.C., Gonzalez-Orozco, C.E. and Trewick, S.A. (2019) Contrasting patterns of diversification in a bird family (Aves: Gruiformes: Rallidae) are revealed by analysis of geospatial distribution of species and phylogenetic diversity. Ecography, 42, 500-510.

Greenlon, A., Chang, P.L., Damtew, Z.M., et al. (2019) Global-level population genomics reveals differential effects of geography and phylogeny on horizontal gene transfer in soil bacteria. Proceedings of the National Academy of Sciences, 201900056.

Lam-Gordillo, O. and Ardisson, P-L. (2019) The global distribution and richness of frog crabs (Raninoidea). Crustaceana, 92, 1-31.

López-Aguirre, C., Hand, S.J., Laffan, S.W., & Archer, M. (2019) Zoogeographical regions and geospatial patterns of phylogenetic diversity and endemism of New World bats. Ecography, 42, 1188-1199.

McDonald-Spicer, C., Knerr, N.J., Encinas-Viso, F. and Schmidt-Lebuhn, A.N. (2019) Big data for a large clade: Bioregionalization and ancestral range estimation in the daisy family (Asteraceae). Journal of Biogeography, 46, 255-267.

Mekala, S., Donoghue, M.J., Farjon, A., Filer, D., Mathews, S., Jetz, W. and Leslie, A.B. (2019) Accumulation over evolutionary time as a major cause of biodiversity hotspots in conifers. Proceedings of the Royal Society B, 286, 20191887.

Shelley, J.J., Dempster, T., Le Feuvre, M.C., Unmack, P.J., Laffan, S.W. & Swearer, S.E. (2019) A revision of the bioregionalisation of freshwater fish communities in the Australian Monsoonal Tropics. Ecology and Evolution, 9, 4568-4588.

Tolley, K.A., da Silva, J.M. & Jansen van Vuuren, B. (2019) South African National Biodiversity Assessment 2018 Technical Report Volume 7: Genetic Diversity. South African National Biodiversity Institute, Pretoria. http://hdl.handle.net/20.500.12143/6376

Friday 13 March 2020

Biodiverse version 3.1 has now been released

Biodiverse version 3.1 has now been released

Versions for Windows, Mac and Linux are available and can be downloaded from https://github.com/shawnlaffan/biodiverse/wiki/Downloads

Installation instructions are at https://github.com/shawnlaffan/biodiverse/wiki/Installation

Version 3.1 represents 7 issues closed across since version 3.00 was released.

Highlights of the changes since version 3.00 are at https://github.com/shawnlaffan/biodiverse/wiki/ReleaseNotes#version-31

A more detailed listing of the closed issues is at https://github.com/shawnlaffan/biodiverse/milestone/16?closed=1

The main changes of note are that the View Labels lists now sort properly again (see issues #744 and #747), and that the Select and Pan buttons work again on Mac binary releases.

Shawn Laffan


For more details about Biodiverse, see http://shawnlaffan.github.io/biodiverse

To see what Biodiverse has been used for, see https://github.com/shawnlaffan/biodiverse/wiki/PublicationsList

You can also join the Biodiverse-users mailing list at http://groups.google.com/group/Biodiverse-users