Publications using Biodiverse in 2021

2021 is now in full swing, so here is a list of publications from 2019 that used Biodiverse.


If you want to see the full list (155 at the time of writing), then go to https://github.com/shawnlaffan/biodiverse/wiki/PublicationsList


For more details about Biodiverse, see http://shawnlaffan.github.io/biodiverse/


Shawn Laffan
12-Mar-2022



Anguiano-Constante, M.A., Dean, E., Starbuck, T., Rodríguez, A. And Munguía-Lino, G. (2021) Diversity, species richness distribution and centers of endemism of Lycianthes (Capsiceae, Solanaceae) in Mexico. Phytotaxa, 514, 39-60.

Bharti, D.K., Edgecombe, G.D., Karanth, K.P. and Joshi, J. (2021) Spatial patterns of phylogenetic diversity and endemism in the Western Ghats, India: A case study using ancient predatory arthropods. Ecology and Evolution, 11, 16499-16513.

Camacho, G.P., Loss, A.C., Fisher, B.L., Blaimer, B.B. (2021) Spatial phylogenomics of acrobat ants in Madagascar—Mountains function as cradles for recent diversity and endemism. Journal of Biogeography, 48, 1706-1719.

Cheikh Albassatneh, M., Escudero, M., Monnet, A‐C., et al. (2021) Spatial patterns of genus‐level phylogenetic endemism in the tree flora of Mediterranean Europe. Diversity and Distributions, 27, 913– 928.

Earl, C., Belitz, M.W., Laffan, S.W., Barve, V., Barve, N., Soltis, D.E., Allen, J.M., Soltis, P.S., Mishler, B.D., Kawahara, A.Y., & Guralnick, R. (2021) Spatial phylogenetics of butterflies in relation to environmental drivers and angiosperm diversity across North America. iScience, 102239.

Flores-Tolentino M., Beltrán-Rodríguez L., Morales-Linares J., et al. (2021) Biogeographic regionalization by spatial and environmental components: Numerical proposal. PLoS ONE 16, e0253152.

Furtado, S.G. and Menini Neto, L. (2021) What is the role of topographic heterogeneity and climate on the distribution and conservation of vascular epiphytes in the Brazilian Atlantic Forest? Biodiversity and Conservation, 30, 1415–1431.

Garcia-Rodriguez, A., Luna-Vega, I., Yáñez-Ordóñez, O., Ramírez-Martínez, J.C., Espinosa, D., and Contreras-Medina, R. (2021). Patrones de Distribución de las Abejas del Bosque Mesófilo de Montaña de la Sierra Madre Oriental, México. Southwestern Entomologist, 46, 1021-1036.

González-Orozco, C.E. (2021) Biogeographical regionalisation of Colombia: a revised area taxonomy. Phytotaxa, 484, 3.

González-Orozco, C.E. (2021) Regiones biogeográficas del género Cinchona L. (Rubiaceae- Cinchoneae). Revista Novedades Colombianas, 16, 135-156.

González-Orozco, C. E., Sosa, C. C., Thornhill, A. H., and Laffan, S. W. (2021). Phylogenetic diversity and conservation of crop wild relatives in Colombia. Evolutionary Applications, 14, 2603-2617.

Gosper, C.R., Coates, D.J., Hopper, S.D., Byrne, M., Yates, C.J. (2021) The role of landscape history in the distribution and conservation of threatened flora in the Southwest Australian Floristic Region. Biological Journal of the Linnean Society, 133, 394–410.

Hammer, T.A., Renton, M., Mucina, L. and Thiele, K. (2021) Arid Australia as a source of plant diversity: the origin and climatic evolution of Ptilotus (Amaranthaceae). Australian Systematic Botany, 34, 570-586.

Hao, T., Elith, J., Guillera-Arroita, G., Lahoz-Monfort, J. J., & May, T. W. (2021). Enhancing repository fungal data for biogeographic analyses. Fungal Ecology, 53, 101097.

Kougioumoutzis, K., Kokkoris, I.P., Panitsa, M., Kallimanis, A., Strid, A., and Dimopoulos, P. (2021) Plant Endemism Centres and Biodiversity Hotspots in Greece. Biology, 10, 72.

Murali, G., Gumbs, R., Meiri, S. and Rull, U. (2021) Global determinants and conservation of evolutionary and geographic rarity in land vertebrates. Science Advances, 7, eabe5582.

Ortiz-Brunel, J.P., Munguía-Lino, G., Castro-Castro, A. and Rodríguez, A. (2021) Biogeographic analysis of the American genus Echeandia (Agavoideae: Asparagaceae). Revista Mexicana de Biodiversidad 92, e923739.

Paz, A., Brown, J.L., Cordeiro, C.L.O., Aguirre‐Santoro, J., Assis, C., Amaro, R.C., Raposo do Amaral, F., Bochorny, T., Bacci, L.F., Caddah, M.K., d’Horta, F., Kaehler, M., Lyra, M., Grohmann, C.H., Reginato, M., Silva‐Brandão, K.L., Freitas, A.V.L., Goldenberg, R., Lohmann, L.G., Michelangeli, F.A., Miyaki, C., Rodrigues, M.T., Silva, T.S. and Carnaval, A.C. (2021) Environmental correlates of taxonomic and phylogenetic diversity in the Atlantic Forest. Journal of Biogeography, 48, 1377-1391.

Pereira, L.C., Chautems, A. and Menini Neto, L. (2021) Biogeography and Conservation of Gesneriaceae in the Serra da Mantiqueira, Southeastern Region of Brazil. Brazilian Journal of Botany, 44, 239–248.

Pinedo-Escatel, J.A., Aragón-Parada, J., Dietrich, C.H., Moya-Raygoza, G., Zahniser, J.N. and Portillo, L. (2021) Biogeographical evaluation and conservation assessment of arboreal leafhoppers in the Mexican Transition Zone biodiversity hotspot. Diversity and Distributions, 27, 1051-1065.

Suissa, J.S., Sundue, M.A. and Testo, W.L. (2021), Mountains, climate and niche heterogeneity explain global patterns of fern diversity. Journal of Biogeography, 48, 1296-1308.

Yang, X., Liu, B., Bussman, R.W., Guan, X., et al. (2021) Integrated plant diversity hotspots and long-term stable conservation strategies in the unique karst area of southern China under global climate change. Forest Ecology and Management, 498, 119540.

Xu, M.‐Z., Yang, L.‐H., Kong, H.‐H., Wen, F. and Kang, M. (2021) Congruent spatial patterns of species richness and phylogenetic diversity in karst flora: the case study of Primulina (Gesnariaceae). Journal of Systematics and Evolution, 59, 251-261.

Xue, T., Gadagkar, S.H., Albright, T.P., Yang, X., Li, J., Xia, C., Wu, J., and Yu, S. (2021) Prioritizing conservation of biodiversity in an alpine region: Distribution pattern and conservation status of seed plants in the Qinghai-Tibetan Plateau. Global Ecology and Conservation, 32, e01885.

Zhang, Y., Chen, J. and Sun, H. (2021) Alpine speciation and morphological innovations: revelations from a species-rich genus in the Northern Hemisphere. AoB PLANTS, 13, 3, plab018.

Zhang, Y., Qian, L., Spalink, D., Sun, L., Chen, J. and Sun, H. (2021) Spatial phylogenetics of two topographic extremes of the Hengduan Mountains in southwestern China and its implications for biodiversity conservation. Plant Diversity, 43, 181-191.

Zhu, Z-X, Harris, A.J., Nizamani, M.M., Thornhill, A.H., Scherson, R.A. and Wang, H-F. (2021) Spatial phylogenetics of the native woody plant species in Hainan, China. Ecology and Evolution, 11, 2100-2109.

Publications using Biodiverse in 2020

Here is a list of publications from 2020 that used Biodiverse.  This is a long overdue post as 2020 is well past.

If you want to see the full list (155 at the time of writing), then go to https://github.com/shawnlaffan/biodiverse/wiki/PublicationsList


For more details about Biodiverse, see http://shawnlaffan.github.io/biodiverse/


Shawn Laffan
12-Mar-2022


Azevedo, J.A.R., Guedes, T.B., Nogueira, C.d.C., Passos, P., Sawaya, R.J., Prudente, A.L.C., Barbo, F.E., Strüssmann, C., Franco, F.L., Arzamendia, V., Giraudo, A.R., Argôlo, A.J.S., Jansen, M., Zaher, H., Tonini, J.F.R., Faurby, S. & Antonelli, A. (2020) Museums and cradles of diversity are geographically coincident for narrowly distributed Neotropical snakes. Ecography, 43, 328-339.

Barrera-Robles, P.H., Burgos-Hernández, M., Ruíz-Acevedo, A.D. and Castillo-Campos, G. (2020) The Linaceae family in Mexico: current status and perspectives. Botanical Sciences, 98, 560-572.

Bein, B., Ebach, M.C., Laffan, S.W., Murphy, D.J. and Cassis, G. (2020) Quantifying vertebrate zoogeographical regions of Australia using geospatial turnover in the species composition of mammals, birds, reptiles and terrestrial amphibians. Zootaxa, 4802, 61-81.

Brown, JL, Paz, A, Reginato, M, et al. (2020) Seeing the forest through many trees: Multi‐taxon patterns of phylogenetic diversity in the Atlantic Forest hotspot. Diversity and Distributions, 26, 1160-1176.

Dagallier, L.-P.M.J., Janssens, S.B., Dauby, G., Blach-Overgaard, A., Mackinder, B.A., Droissart, V., Svenning, J.-C., Sosef, M.S.M., Stévart, T., Harris, D.J., Sonké, B., Wieringa, J.J., Hardy, O.J. and Couvreur, T.L.P. (2020) Cradles and museums of generic plant diversity across tropical Africa. New Phytologist, 225, 2196-2213.

Dalrymple, R.L., Kemp, D.J., Flores-Moreno, H., Laffan, S.W., White, T.E., Hemmings, F.A. & Moles, A.T. (2020) Macroecological patterns in flower colour are shaped by both biotic and abiotic factors. New Phytologist, 228, 1972-1985.

González-Orozco, C.E., Sánchez Galán, A.A., Ramos P.E. and Yockteng, R (2020) Exploring the diversity and distribution of crop wild relatives of cacao (Theobroma cacao L.) in Colombia. Genetic Resources and Crop Evolution, 67, 2071–2085.

Huang, C., Ebach, M.C. and Ahyong, S. (2020) Bioregionalisation of the freshwater zoogeographical areas of mainland China. Zootaxa, 4742, 2.

Kougioumoutzis, K., Kokkoris, I.P., Panitsa, M., Trigas, P., Strid, A. and Dimopoulos, P. (2020) Spatial Phylogenetics, Biogeographical Patterns and Conservation Implications of the Endemic Flora of Crete (Aegean, Greece) under Climate Change Scenarios. Biology, 9, 199.

Mienna, I.M., Speed, J.D.M., Bendiksby, M., Thornhill, A.H., Mishler, B.D., Martin, M.D. (2020) Differential patterns of floristic phylogenetic diversity across a post‐glacial landscape. Journal of Biogeography, 47, 915-926.

Mishler, B.D., Guralnick, R., Soltis, P.S., Smith, S.A., Soltis, D.E., Barve, N., Allen, J.M. and Laffan, S.W. (2020) Spatial Phylogenetics of the North American Flora. Journal of Systematics and Evolution, 58, 393-405.

Moles, A.T., Laffan, S.W., Keighery, M., Tindall, M.L. and Chen, S. (2020) A hairy situation: Plant species in warm, sunny places are more likely to have pubescent leaves. Journal of Biogeography, 47, 1934-1944.

Moraes, A.M., Milward-de-Azevedo, M.A., Menini Neto, L. et al. (2020) Distribution patterns of Passiflora L. (Passifloraceae s.s.) in the Serra da Mantiqueira, Southeast Brazil. Brazilian Journal of Botany, 43, 999–1012.

Paz, A., Reginato, M., Michelangeli, F.A., Goldenberg, R., Caddah, M.K., Aguirre-Santoro, J., Kaehler, M., Lohmann, L.G. & Carnaval, A. (2020) Predicting Patterns of Plant Diversity and Endemism in the Tropics Using Remote Sensing Data: A Study Case from the Brazilian Atlantic Forest. Remote Sensing of Plant Biodiversity (eds J. Cavender-Bares, J.A. Gamon & P.A. Townsend), pp. 255-266. Springer, Cham.

Ruiz-Sanchez, E., Munguía-Lino, G., Vargas-Amado, G., Rodríguez, A. (2020) Diversity, endemism and conservation status of native Mexican woody bamboos (Poaceae: Bambusoideae: Bambuseae). Botanical Journal of the Linnean Society, 192, 281–295.

Sosa, V., Vásquez-Cruz, M. and Villarreal-Quintanilla, J.A. (2020) Influence of climate stability on endemism of the vascular plants of the Chihuahuan Desert. Journal of Arid Environments, 177, 104139.

Suissa, J.S. and Sundue, M.A. (2020) Diversity Patterns of Neotropical Ferns: Revisiting Tryon’s Centers of Richness and Endemism. American Fern Journal 110, 211–232.

Toro-Núñez, O. and Lira-Noriega, Andrés (2020) Discordant phylogenetic endemism patterns in a recently diversified Brassicaceae lineage from the Atacama Desert: When choices in phylogenetics and species distribution information matter. Journal of Biogeography, 47, 1792-1804.